No. words: 1138; after pruning: 1098


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -1.8 -1.8 (1,1:932)  146  3.96 2.48 0.00  BE399500At01P067B01P067B071F1_012.ab1      392   593 (2)  C BE399500At01P067B01P067B071R1_012.ab1   (0)   543   337 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.8       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  72 nodes

 38 str. conn. components

Path
    1    BE399500At01P067B01P067B071F1_012.ab1     1 
  483  C BE399500At01P067B01P067B071R1_012.ab1   452 
  487    BE399500At01P067B01P067B071F1_012.ab1   487 
  491  C BE399500At01P067B01P067B071R1_012.ab1   444 
Contig length: old 933, new 934

Contig length: old 934, new 934
New start: 0