No. words: 1768; after pruning: 1742


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 18.9 (1,1:855)  822  0.00 0.00 0.00  BE399500Ld09P067B01P067B071F1_056.ab1        1   850 (0)  C BE399500Ld09P067B01P067B071R1_056.ab1   (62)   856     7 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  426 nodes

 215 str. conn. components

Path
    1  C BE399500Ld09P067B01P067B071R1_056.ab1   918 
   66    BE399500Ld09P067B01P067B071F1_056.ab1     4 
   74  C BE399500Ld09P067B01P067B071R1_056.ab1   845 
   78    BE399500Ld09P067B01P067B071F1_056.ab1    16 
  258  C BE399500Ld09P067B01P067B071R1_056.ab1   661 
  262    BE399500Ld09P067B01P067B071F1_056.ab1   200 
  522  C BE399500Ld09P067B01P067B071R1_056.ab1   397 
  570    BE399500Ld09P067B01P067B071F1_056.ab1   508 
  574  C BE399500Ld09P067B01P067B071R1_056.ab1   345 
  578    BE399500Ld09P067B01P067B071F1_056.ab1   516 
  586  C BE399500Ld09P067B01P067B071R1_056.ab1   333 
  594    BE399500Ld09P067B01P067B071F1_056.ab1   532 
  602  C BE399500Ld09P067B01P067B071R1_056.ab1   317 
  638    BE399500Ld09P067B01P067B071F1_056.ab1   576 
  646  C BE399500Ld09P067B01P067B071R1_056.ab1   273 
  654    BE399500Ld09P067B01P067B071F1_056.ab1   592 
  662  C BE399500Ld09P067B01P067B071R1_056.ab1   257 
  726    BE399500Ld09P067B01P067B071F1_056.ab1   664 
  730  C BE399500Ld09P067B01P067B071R1_056.ab1   189 
Contig length: old 918, new 918

Contig length: old 918, new 918
New start: 0