No. words: 1606; after pruning: 1580


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 16.6 (1,1:766)  723  0.00 0.13 0.00  BE399500Sn30P137A02P067B071F1_087.ab1        3   767 (37)  C BE399500Sn30P137A02P067B071R1_087.ab1   (36)   766     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  380 nodes

 192 str. conn. components

Path
    1  C BE399500Sn30P137A02P067B071R1_087.ab1   802 
   44    BE399500Sn30P137A02P067B071F1_087.ab1    10 
   48  C BE399500Sn30P137A02P067B071R1_087.ab1   755 
   60    BE399500Sn30P137A02P067B071F1_087.ab1    25 
  216  C BE399500Sn30P137A02P067B071R1_087.ab1   587 
  220    BE399500Sn30P137A02P067B071F1_087.ab1   185 
  560  C BE399500Sn30P137A02P067B071R1_087.ab1   243 
  564    BE399500Sn30P137A02P067B071F1_087.ab1   529 
  572  C BE399500Sn30P137A02P067B071R1_087.ab1   231 
  584    BE399500Sn30P137A02P067B071F1_087.ab1   549 
  588  C BE399500Sn30P137A02P067B071R1_087.ab1   215 
  592    BE399500Sn30P137A02P067B071F1_087.ab1   557 
  596  C BE399500Sn30P137A02P067B071R1_087.ab1   207 
  792    BE399500Sn30P137A02P067B071F1_087.ab1   757 
Contig length: old 839, new 839

Contig length: old 839, new 839
New start: 0