No. words: 1622; after pruning: 1596


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.1 (1,1:780)  735  0.13 0.13 0.00  BE399500Sn31P137A02P067B071F1_091.ab1        1   781 (32)  C BE399500Sn31P137A02P067B071R1_091.ab1   (27)   782     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  386 nodes

 195 str. conn. components

Path
    1  C BE399500Sn31P137A02P067B071R1_091.ab1   809 
   31    BE399500Sn31P137A02P067B071F1_091.ab1     4 
   40  C BE399500Sn31P137A02P067B071R1_091.ab1   769 
   44    BE399500Sn31P137A02P067B071F1_091.ab1    17 
   76  C BE399500Sn31P137A02P067B071R1_091.ab1   733 
   80    BE399500Sn31P137A02P067B071F1_091.ab1    53 
  116  C BE399500Sn31P137A02P067B071R1_091.ab1   693 
  124    BE399500Sn31P137A02P067B071F1_091.ab1    97 
  460  C BE399500Sn31P137A02P067B071R1_091.ab1   349 
  468    BE399500Sn31P137A02P067B071F1_091.ab1   441 
  472  C BE399500Sn31P137A02P067B071R1_091.ab1   337 
  476    BE399500Sn31P137A02P067B071F1_091.ab1   449 
  484  C BE399500Sn31P137A02P067B071R1_091.ab1   325 
  488    BE399500Sn31P137A02P067B071F1_091.ab1   461 
  532  C BE399500Sn31P137A02P067B071R1_091.ab1   277 
  536    BE399500Sn31P137A02P067B071F1_091.ab1   509 
  556  C BE399500Sn31P137A02P067B071R1_091.ab1   253 
  560    BE399500Sn31P137A02P067B071F1_091.ab1   533 
  568  C BE399500Sn31P137A02P067B071R1_091.ab1   241 
  580    BE399500Sn31P137A02P067B071F1_091.ab1   553 
  584  C BE399500Sn31P137A02P067B071R1_091.ab1   225 
  795    BE399500Sn31P137A02P067B071F1_091.ab1   768 
  799  C BE399500Sn31P137A02P067B071R1_091.ab1    10 
  803    BE399500Sn31P137A02P067B071F1_091.ab1   776 
Contig length: old 841, new 840

Contig length: old 840, new 840
New start: 0