No. words: 1613; after pruning: 1587


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 16.6 (1,1:772)  729  0.00 0.13 0.00  BE399500Ta20P137A02P067B071F1_072.ab1        3   773 (31)  C BE399500Ta20P137A02P067B071R1_072.ab1   (37)   772     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  384 nodes

 194 str. conn. components

Path
    1  C BE399500Ta20P137A02P067B071R1_072.ab1   809 
   45    BE399500Ta20P137A02P067B071F1_072.ab1    10 
   49  C BE399500Ta20P137A02P067B071R1_072.ab1   761 
   61    BE399500Ta20P137A02P067B071F1_072.ab1    25 
  569  C BE399500Ta20P137A02P067B071R1_072.ab1   241 
  589    BE399500Ta20P137A02P067B071F1_072.ab1   553 
  601  C BE399500Ta20P137A02P067B071R1_072.ab1   209 
  709    BE399500Ta20P137A02P067B071F1_072.ab1   673 
  713  C BE399500Ta20P137A02P067B071R1_072.ab1    97 
  757    BE399500Ta20P137A02P067B071F1_072.ab1   721 
  765  C BE399500Ta20P137A02P067B071R1_072.ab1    45 
  793    BE399500Ta20P137A02P067B071F1_072.ab1   757 
Contig length: old 840, new 840

Contig length: old 840, new 840
New start: 0