No. words: 2678; after pruning: 2626


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.5 (1,1:699)  661  0.57 0.00 0.00  BE399869Ld01P027G06P027G121F1_080.ab1        1   700 (23)  C BE399869Ld01P027G06P027G121R1_080.ab1   (0)   700     1 *
Merge:(0)    0    0.0 9.4 (2,1:-2)  526  2.66 0.17 0.00  BE399869Ld01P027G06P027G121F1_080.ab1        1   601 (122)    BE399869Ld01P027G06P027G121F1_065.ab1        3   604 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    1      1
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       3 

Pass 4
             Gap  Score    
Rjct: (2)    0   -8.7 -0.3 (3,1:698)  503  6.30 0.15 0.15  BE399869Ld01P027G06P027G121R1_080.ab1        2   652 (48)    BE399869Ld01P027G06P027G121R1_065.ab1        1   651 (0) *
  Worst pair: offset 0 
LLR breakdown: discreps: -19.8 (<20 part: -19.8 (#=57), >20:0.0 (#=0); in HQ: -19.8, out HQ 0.0), match: 11.1  total: -8.7  362 10.29 0.00 0.00  BE399869Ld01P027G06P027G121F1_065.ab1       51   604 (0)  C BE399869Ld01P027G06P027G121R1_065.ab1   (0)   651    98 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      1
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-8.7       0        1

Gap   # merges  # failures
 size
 0       0        1

Offset
  0       2 

Read equivalence class histogram:
    1    1
    3    1

Chimera merges: 


Contig 2:  852 nodes

 267 str. conn. components

Path
    1    BE399869Ld01P027G06P027G121F1_065.ab1     1 
    7    BE399869Ld01P027G06P027G121F1_080.ab1     5 
   11    BE399869Ld01P027G06P027G121F1_065.ab1    11 
   19    BE399869Ld01P027G06P027G121F1_080.ab1    17 
   23    BE399869Ld01P027G06P027G121F1_065.ab1    23 
   39    BE399869Ld01P027G06P027G121F1_080.ab1    37 
   43    BE399869Ld01P027G06P027G121F1_065.ab1    43 
   67    BE399869Ld01P027G06P027G121F1_080.ab1    65 
   83    BE399869Ld01P027G06P027G121F1_065.ab1    83 
   91    BE399869Ld01P027G06P027G121F1_080.ab1    89 
  107    BE399869Ld01P027G06P027G121F1_065.ab1   107 
  115    BE399869Ld01P027G06P027G121F1_080.ab1   113 
  123    BE399869Ld01P027G06P027G121F1_065.ab1   123 
  127    BE399869Ld01P027G06P027G121F1_080.ab1   125 
  139    BE399869Ld01P027G06P027G121F1_065.ab1   139 
  167    BE399869Ld01P027G06P027G121F1_080.ab1   165 
  195    BE399869Ld01P027G06P027G121F1_065.ab1   195 
  197    BE399869Ld01P027G06P027G121F1_080.ab1   195 
  269    BE399869Ld01P027G06P027G121F1_065.ab1   269 
  301    BE399869Ld01P027G06P027G121F1_080.ab1   299 
  325    BE399869Ld01P027G06P027G121F1_065.ab1   325 
  327    BE399869Ld01P027G06P027G121F1_080.ab1   325 
  477  C BE399869Ld01P027G06P027G121R1_080.ab1   226 
  696    BE399869Ld01P027G06P027G121F1_080.ab1   694 
Contig length: old 725, new 725

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    BE399869Ld01P027G06P027G121R1_065.ab1     1 
Contig length: old 651, new 651

Contig length: old 725, new 725
New start: 0