No. words: 1420; after pruning: 1394


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 1.7 (1,1:697)  592  3.74 0.00 0.14  BE399869Ld09P027G06P027G121F1_095.ab1        4   699 (23)  C BE399869Ld09P027G06P027G121R1_095.ab1   (3)   695     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  272 nodes

 138 str. conn. components

Path
    1  C BE399869Ld09P027G06P027G121R1_095.ab1   698 
   29    BE399869Ld09P027G06P027G121F1_095.ab1    29 
   33  C BE399869Ld09P027G06P027G121R1_095.ab1   666 
   41    BE399869Ld09P027G06P027G121F1_095.ab1    41 
   56  C BE399869Ld09P027G06P027G121R1_095.ab1   643 
   64    BE399869Ld09P027G06P027G121F1_095.ab1    64 
   68  C BE399869Ld09P027G06P027G121R1_095.ab1   631 
   93    BE399869Ld09P027G06P027G121F1_095.ab1    93 
  113  C BE399869Ld09P027G06P027G121R1_095.ab1   586 
  117    BE399869Ld09P027G06P027G121F1_095.ab1   117 
  121  C BE399869Ld09P027G06P027G121R1_095.ab1   578 
  125    BE399869Ld09P027G06P027G121F1_095.ab1   125 
  129  C BE399869Ld09P027G06P027G121R1_095.ab1   570 
  133    BE399869Ld09P027G06P027G121F1_095.ab1   133 
  137  C BE399869Ld09P027G06P027G121R1_095.ab1   562 
  145    BE399869Ld09P027G06P027G121F1_095.ab1   145 
  153  C BE399869Ld09P027G06P027G121R1_095.ab1   546 
  185    BE399869Ld09P027G06P027G121F1_095.ab1   185 
  189  C BE399869Ld09P027G06P027G121R1_095.ab1   510 
  213    BE399869Ld09P027G06P027G121F1_095.ab1   213 
  253  C BE399869Ld09P027G06P027G121R1_095.ab1   446 
  257    BE399869Ld09P027G06P027G121F1_095.ab1   257 
  279  C BE399869Ld09P027G06P027G121R1_095.ab1   420 
  307    BE399869Ld09P027G06P027G121F1_095.ab1   307 
  311  C BE399869Ld09P027G06P027G121R1_095.ab1   388 
  327    BE399869Ld09P027G06P027G121F1_095.ab1   327 
  331  C BE399869Ld09P027G06P027G121R1_095.ab1   368 
  343    BE399869Ld09P027G06P027G121F1_095.ab1   343 
  351  C BE399869Ld09P027G06P027G121R1_095.ab1   348 
  366    BE399869Ld09P027G06P027G121F1_095.ab1   366 
  370  C BE399869Ld09P027G06P027G121R1_095.ab1   329 
  382    BE399869Ld09P027G06P027G121F1_095.ab1   382 
  386  C BE399869Ld09P027G06P027G121R1_095.ab1   313 
  394    BE399869Ld09P027G06P027G121F1_095.ab1   394 
  402  C BE399869Ld09P027G06P027G121R1_095.ab1   297 
  467    BE399869Ld09P027G06P027G121F1_095.ab1   467 
  471  C BE399869Ld09P027G06P027G121R1_095.ab1   228 
  675    BE399869Ld09P027G06P027G121F1_095.ab1   675 
  684  C BE399869Ld09P027G06P027G121R1_095.ab1    16 
  696    BE399869Ld09P027G06P027G121F1_095.ab1   696 
Contig length: old 722, new 722

Contig length: old 722, new 722
New start: 0 
S Change at: 17; seg lengths: entry 1, contig 1
S Change at: 51; seg lengths: entry 1, contig 1
S Change at: 196; seg lengths: entry 1, contig 1
S Change at: 238; seg lengths: entry 1, contig 1
S Change at: 245; seg lengths: entry 1, contig 1