No. words: 1078; after pruning: 1052


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 7.5 (1,1:369)  363  0.00 0.00 0.27  BE403428Ld05P129B01P129B071F1_094.ab1        1   368 (179)  C BE403428Ld05P129B01P129B071R1_094.ab1   (162)   369     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  184 nodes

 94 str. conn. components

Path
    1  C BE403428Ld05P129B01P129B071R1_094.ab1   531 
  226    BE403428Ld05P129B01P129B071F1_094.ab1    64 
  238  C BE403428Ld05P129B01P129B071R1_094.ab1   294 
  318    BE403428Ld05P129B01P129B071F1_094.ab1   156 
  338  C BE403428Ld05P129B01P129B071R1_094.ab1   194 
  350    BE403428Ld05P129B01P129B071F1_094.ab1   188 
  358  C BE403428Ld05P129B01P129B071R1_094.ab1   174 
  374    BE403428Ld05P129B01P129B071F1_094.ab1   212 
  382  C BE403428Ld05P129B01P129B071R1_094.ab1   150 
  386    BE403428Ld05P129B01P129B071F1_094.ab1   224 
  402  C BE403428Ld05P129B01P129B071R1_094.ab1   130 
  406    BE403428Ld05P129B01P129B071F1_094.ab1   244 
  418  C BE403428Ld05P129B01P129B071R1_094.ab1   114 
  426    BE403428Ld05P129B01P129B071F1_094.ab1   264 
Contig length: old 708, new 709

Contig length: old 709, new 709
New start: 0