No. words: 1076; after pruning: 1050


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 6.1 (1,1:369)  360  0.00 0.27 0.27  BE403428Ld09P129B01P129B071F1_086.ab1        2   370 (179)  C BE403428Ld09P129B01P129B071R1_086.ab1   (158)   369     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  180 nodes

 92 str. conn. components

Path
    1  C BE403428Ld09P129B01P129B071R1_086.ab1   527 
  210    BE403428Ld09P129B01P129B071F1_086.ab1    52 
  218  C BE403428Ld09P129B01P129B071R1_086.ab1   310 
  230    BE403428Ld09P129B01P129B071F1_086.ab1    72 
  238  C BE403428Ld09P129B01P129B071R1_086.ab1   290 
  250    BE403428Ld09P129B01P129B071F1_086.ab1    92 
  254  C BE403428Ld09P129B01P129B071R1_086.ab1   274 
  290    BE403428Ld09P129B01P129B071F1_086.ab1   132 
  306  C BE403428Ld09P129B01P129B071R1_086.ab1   222 
  318    BE403428Ld09P129B01P129B071F1_086.ab1   160 
  334  C BE403428Ld09P129B01P129B071R1_086.ab1   194 
  358    BE403428Ld09P129B01P129B071F1_086.ab1   200 
  362  C BE403428Ld09P129B01P129B071R1_086.ab1   166 
  370    BE403428Ld09P129B01P129B071F1_086.ab1   212 
  402  C BE403428Ld09P129B01P129B071R1_086.ab1   126 
  406    BE403428Ld09P129B01P129B071F1_086.ab1   248 
  418  C BE403428Ld09P129B01P129B071R1_086.ab1   110 
  422    BE403428Ld09P129B01P129B071F1_086.ab1   264 
  474  C BE403428Ld09P129B01P129B071R1_086.ab1    54 
  478    BE403428Ld09P129B01P129B071F1_086.ab1   320 
Contig length: old 706, new 707

Contig length: old 707, new 707
New start: 0