No. words: 1182; after pruning: 1156


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 9.7 (1,1:456)  449  0.00 0.00 0.00  BE403619Ld02P016B01B07R1_025.ab1        1   454 (129)  C BE403619Ld02P016B01B07F1_025.ab1   (142)   457     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C BE403619Ld02P016B01B07F1_025.ab1   599 
  191    BE403619Ld02P016B01B07R1_025.ab1    49 
  207  C BE403619Ld02P016B01B07F1_025.ab1   393 
  227    BE403619Ld02P016B01B07R1_025.ab1    85 
  235  C BE403619Ld02P016B01B07F1_025.ab1   365 
  251    BE403619Ld02P016B01B07R1_025.ab1   109 
  287  C BE403619Ld02P016B01B07F1_025.ab1   313 
  291    BE403619Ld02P016B01B07R1_025.ab1   149 
Contig length: old 725, new 725

Contig length: old 725, new 725
New start: 0