No. words: 1189; after pruning: 1163


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 7.1 (1,1:463)  451  0.00 0.00 0.22  BE403619Ld07P016B01B07R1_032.ab1        1   461 (141)  C BE403619Ld07P016B01B07F1_032.ab1   (124)   463     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  230 nodes

 117 str. conn. components

Path
    1  C BE403619Ld07P016B01B07F1_032.ab1   587 
  185    BE403619Ld07P016B01B07R1_032.ab1    61 
  189  C BE403619Ld07P016B01B07F1_032.ab1   399 
  201    BE403619Ld07P016B01B07R1_032.ab1    77 
  209  C BE403619Ld07P016B01B07F1_032.ab1   379 
  245    BE403619Ld07P016B01B07R1_032.ab1   121 
  265  C BE403619Ld07P016B01B07F1_032.ab1   323 
  273    BE403619Ld07P016B01B07R1_032.ab1   149 
  285  C BE403619Ld07P016B01B07F1_032.ab1   303 
  297    BE403619Ld07P016B01B07R1_032.ab1   173 
  481  C BE403619Ld07P016B01B07F1_032.ab1   107 
  513    BE403619Ld07P016B01B07R1_032.ab1   389 
  521  C BE403619Ld07P016B01B07F1_032.ab1    67 
  525    BE403619Ld07P016B01B07R1_032.ab1   401 
  537  C BE403619Ld07P016B01B07F1_032.ab1    51 
  541    BE403619Ld07P016B01B07R1_032.ab1   417 
Contig length: old 725, new 726

Contig length: old 726, new 726
New start: 0