No. words: 1161; after pruning: 1135


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -4.5 -4.5 (1,1:535)  455  4.29 0.00 0.00  BE403647As02P129C01P129C071F1_014.ab1        1   536 (47)  C BE403647As02P129C01P129C071R1_014.ab1   (42)   536     1 *
  Worst pair: offset 0 
LLR breakdown: discreps: -16.0 (<20 part: -13.4 (#=22), >20:-2.6 (#=1); in HQ: -16.0, out HQ 0.0), match: 11.4  total: -4.6  455  4.29 0.00 0.00  BE403647As02P129C01P129C071F1_014.ab1        1   536 (47)  C BE403647As02P129C01P129C071R1_014.ab1   (42)   536     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.5       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1  C BE403647As02P129C01P129C071R1_014.ab1   578 
   54    BE403647As02P129C01P129C071F1_014.ab1    12 
   70  C BE403647As02P129C01P129C071R1_014.ab1   509 
  106    BE403647As02P129C01P129C071F1_014.ab1    64 
  110  C BE403647As02P129C01P129C071R1_014.ab1   469 
  150    BE403647As02P129C01P129C071F1_014.ab1   108 
  154  C BE403647As02P129C01P129C071R1_014.ab1   425 
  162    BE403647As02P129C01P129C071F1_014.ab1   120 
  300  C BE403647As02P129C01P129C071R1_014.ab1   279 
  304    BE403647As02P129C01P129C071F1_014.ab1   262 
  328  C BE403647As02P129C01P129C071R1_014.ab1   251 
  332    BE403647As02P129C01P129C071F1_014.ab1   290 
  385  C BE403647As02P129C01P129C071R1_014.ab1   194 
  389    BE403647As02P129C01P129C071F1_014.ab1   347 
  393  C BE403647As02P129C01P129C071R1_014.ab1   186 
  397    BE403647As02P129C01P129C071F1_014.ab1   355 
  418  C BE403647As02P129C01P129C071R1_014.ab1   161 
  422    BE403647As02P129C01P129C071F1_014.ab1   380 
  454  C BE403647As02P129C01P129C071R1_014.ab1   125 
  458    BE403647As02P129C01P129C071F1_014.ab1   416 
  479  C BE403647As02P129C01P129C071R1_014.ab1   100 
  531    BE403647As02P129C01P129C071F1_014.ab1   489 
  535  C BE403647As02P129C01P129C071R1_014.ab1    44 
  555    BE403647As02P129C01P129C071F1_014.ab1   513 
  559  C BE403647As02P129C01P129C071R1_014.ab1    20 
  575    BE403647As02P129C01P129C071F1_014.ab1   533 
Contig length: old 625, new 625

Contig length: old 625, new 625
New start: 0 
S Change at: 235; seg lengths: entry 1, contig 1