No. words: 1415; after pruning: 1375


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 10.0 (1,1:555)  534  0.00 0.18 0.18  BE403647Ld03P129C01P129C071F1_008.ab1        2   556 (173)  C BE403647Ld03P129C01P129C071R1_008.ab1   (131)   555     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  272 nodes

 138 str. conn. components

Path
    1  C BE403647Ld03P129C01P129C071R1_008.ab1   686 
  219    BE403647Ld03P129C01P129C071F1_008.ab1    88 
  223  C BE403647Ld03P129C01P129C071R1_008.ab1   464 
  263    BE403647Ld03P129C01P129C071F1_008.ab1   132 
  283  C BE403647Ld03P129C01P129C071R1_008.ab1   404 
  295    BE403647Ld03P129C01P129C071F1_008.ab1   164 
Contig length: old 859, new 860

Contig length: old 860, new 860
New start: 0 
S Change at: 819; seg lengths: entry 1, contig 1