No. words: 1417; after pruning: 1391


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.1 (1,1:549)  534  0.00 0.18 0.00  BE403647Ld10P129C01P129C071F1_050.ab1        1   550 (175)  C BE403647Ld10P129C01P129C071R1_050.ab1   (141)   551     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  274 nodes

 139 str. conn. components

Path
    1  C BE403647Ld10P129C01P129C071R1_050.ab1   692 
  208    BE403647Ld10P129C01P129C071F1_050.ab1    66 
  212  C BE403647Ld10P129C01P129C071R1_050.ab1   481 
  216    BE403647Ld10P129C01P129C071F1_050.ab1    74 
  220  C BE403647Ld10P129C01P129C071R1_050.ab1   473 
  240    BE403647Ld10P129C01P129C071F1_050.ab1    98 
  244  C BE403647Ld10P129C01P129C071R1_050.ab1   449 
  248    BE403647Ld10P129C01P129C071F1_050.ab1   106 
  256  C BE403647Ld10P129C01P129C071R1_050.ab1   437 
  260    BE403647Ld10P129C01P129C071F1_050.ab1   118 
  276  C BE403647Ld10P129C01P129C071R1_050.ab1   417 
  280    BE403647Ld10P129C01P129C071F1_050.ab1   138 
  284  C BE403647Ld10P129C01P129C071R1_050.ab1   409 
  292    BE403647Ld10P129C01P129C071F1_050.ab1   150 
  296  C BE403647Ld10P129C01P129C071R1_050.ab1   397 
  316    BE403647Ld10P129C01P129C071F1_050.ab1   174 
  324  C BE403647Ld10P129C01P129C071R1_050.ab1   369 
  348    BE403647Ld10P129C01P129C071F1_050.ab1   206 
  484  C BE403647Ld10P129C01P129C071R1_050.ab1   209 
  492    BE403647Ld10P129C01P129C071F1_050.ab1   350 
  500  C BE403647Ld10P129C01P129C071R1_050.ab1   193 
  504    BE403647Ld10P129C01P129C071F1_050.ab1   362 
  564  C BE403647Ld10P129C01P129C071R1_050.ab1   129 
  568    BE403647Ld10P129C01P129C071F1_050.ab1   426 
  572  C BE403647Ld10P129C01P129C071R1_050.ab1   121 
  576    BE403647Ld10P129C01P129C071F1_050.ab1   434 
Contig length: old 867, new 867

Contig length: old 867, new 867
New start: 0