No. words: 1162; after pruning: 1136


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.9 (1,1:534)  523  0.00 0.00 0.00  BE403647Tu02P129C01P129C071F1_001.ab1        1   535 (46)  C BE403647Tu02P129C01P129C071R1_001.ab1   (46)   535     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  270 nodes

 137 str. conn. components

Path
    1  C BE403647Tu02P129C01P129C071R1_001.ab1   581 
   90    BE403647Tu02P129C01P129C071F1_001.ab1    44 
   94  C BE403647Tu02P129C01P129C071R1_001.ab1   488 
   98    BE403647Tu02P129C01P129C071F1_001.ab1    52 
  142  C BE403647Tu02P129C01P129C071R1_001.ab1   440 
  154    BE403647Tu02P129C01P129C071F1_001.ab1   108 
  530  C BE403647Tu02P129C01P129C071R1_001.ab1    52 
  554    BE403647Tu02P129C01P129C071F1_001.ab1   508 
  558  C BE403647Tu02P129C01P129C071R1_001.ab1    24 
  562    BE403647Tu02P129C01P129C071F1_001.ab1   516 
Contig length: old 627, new 627

Contig length: old 627, new 627
New start: 0