No. words: 1467; after pruning: 1441


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 13.3 (1,1:754)  654  0.00 0.00 0.00  BE404125At01P016C01C07R1_020.ab1        4   676 (0)  C BE404125At01P016C01C07F1_020.ab1   (39)   752    80 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  338 nodes

 171 str. conn. components

Path
    1  C BE404125At01P016C01C07F1_020.ab1   791 
   43    BE404125At01P016C01C07R1_020.ab1     7 
   71  C BE404125At01P016C01C07F1_020.ab1   721 
   75    BE404125At01P016C01C07R1_020.ab1    39 
  111  C BE404125At01P016C01C07F1_020.ab1   681 
  115    BE404125At01P016C01C07R1_020.ab1    79 
  275  C BE404125At01P016C01C07F1_020.ab1   517 
  279    BE404125At01P016C01C07R1_020.ab1   243 
  283  C BE404125At01P016C01C07F1_020.ab1   509 
  643    BE404125At01P016C01C07R1_020.ab1   607 
  647  C BE404125At01P016C01C07F1_020.ab1   145 
Contig length: old 791, new 791

Contig length: old 791, new 791
New start: 0