No. words: 1273; after pruning: 1247


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.6 (1,1:475)  458  0.00 0.00 0.00  BE404125Ld05P016C01C07R1_039.ab1        1   476 (149)  C BE404125Ld05P016C01C07F1_039.ab1   (172)   476     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C BE404125Ld05P016C01C07F1_039.ab1   648 
  228    BE404125Ld05P016C01C07R1_039.ab1    56 
  232  C BE404125Ld05P016C01C07F1_039.ab1   417 
  240    BE404125Ld05P016C01C07R1_039.ab1    68 
  256  C BE404125Ld05P016C01C07F1_039.ab1   393 
  300    BE404125Ld05P016C01C07R1_039.ab1   128 
  304  C BE404125Ld05P016C01C07F1_039.ab1   345 
  320    BE404125Ld05P016C01C07R1_039.ab1   148 
Contig length: old 797, new 797

Contig length: old 797, new 797
New start: 0