No. words: 1239; after pruning: 1213


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 8.0 (1,1:459)  448  0.00 0.22 0.00  BE404374Ld09P129E01P129F071F1_078.ab1        4   460 (177)  C BE404374Ld09P129E01P129F071R1_078.ab1   (144)   458     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1  C BE404374Ld09P129E01P129F071R1_078.ab1   602 
  228    BE404374Ld09P129E01P129F071F1_078.ab1    86 
  236  C BE404374Ld09P129E01P129F071R1_078.ab1   367 
  288    BE404374Ld09P129E01P129F071F1_078.ab1   146 
  316  C BE404374Ld09P129E01P129F071R1_078.ab1   287 
  324    BE404374Ld09P129E01P129F071F1_078.ab1   182 
  368  C BE404374Ld09P129E01P129F071R1_078.ab1   235 
  384    BE404374Ld09P129E01P129F071F1_078.ab1   242 
  408  C BE404374Ld09P129E01P129F071R1_078.ab1   195 
  412    BE404374Ld09P129E01P129F071F1_078.ab1   270 
  432  C BE404374Ld09P129E01P129F071R1_078.ab1   171 
  456    BE404374Ld09P129E01P129F071F1_078.ab1   314 
Contig length: old 779, new 779

Contig length: old 779, new 779
New start: 0