No. words: 1411; after pruning: 1371


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.9 (1,1:662)  644  0.15 0.15 0.00  BE404374Sn25P146B02P129G071F1_087.ab1        1   662 (45)  C BE404374Sn25P146B02P129G071R1_087.ab1   (41)   663     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  328 nodes

 166 str. conn. components

Path
    1  C BE404374Sn25P146B02P129G071R1_087.ab1   704 
   71    BE404374Sn25P146B02P129G071F1_087.ab1    29 
  123  C BE404374Sn25P146B02P129G071R1_087.ab1   582 
  167    BE404374Sn25P146B02P129G071F1_087.ab1   125 
  171  C BE404374Sn25P146B02P129G071R1_087.ab1   534 
  295    BE404374Sn25P146B02P129G071F1_087.ab1   253 
  303  C BE404374Sn25P146B02P129G071R1_087.ab1   402 
  455    BE404374Sn25P146B02P129G071F1_087.ab1   413 
  479  C BE404374Sn25P146B02P129G071R1_087.ab1   226 
  563    BE404374Sn25P146B02P129G071F1_087.ab1   521 
  579  C BE404374Sn25P146B02P129G071R1_087.ab1   126 
  615    BE404374Sn25P146B02P129G071F1_087.ab1   573 
  627  C BE404374Sn25P146B02P129G071R1_087.ab1    78 
  675    BE404374Sn25P146B02P129G071F1_087.ab1   633 
  683  C BE404374Sn25P146B02P129G071R1_087.ab1    22 
  687    BE404374Sn25P146B02P129G071F1_087.ab1   645 
  695  C BE404374Sn25P146B02P129G071R1_087.ab1    10 
  699    BE404374Sn25P146B02P129G071F1_087.ab1   657 
Contig length: old 748, new 749

Contig length: old 749, new 749
New start: 0 
S Change at: 45; seg lengths: entry 1, contig 1