No. words: 1407; after pruning: 1381


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.4 (1,1:660)  642  0.30 0.00 0.00  BE404374Sn27P146B02P129G071F1_085.ab1        1   661 (47)  C BE404374Sn27P146B02P129G071R1_085.ab1   (38)   661     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  326 nodes

 165 str. conn. components

Path
    1  C BE404374Sn27P146B02P129G071R1_085.ab1   699 
   58    BE404374Sn27P146B02P129G071F1_085.ab1    20 
   62  C BE404374Sn27P146B02P129G071R1_085.ab1   638 
   66    BE404374Sn27P146B02P129G071F1_085.ab1    28 
  122  C BE404374Sn27P146B02P129G071R1_085.ab1   578 
  126    BE404374Sn27P146B02P129G071F1_085.ab1    88 
  134  C BE404374Sn27P146B02P129G071R1_085.ab1   566 
  138    BE404374Sn27P146B02P129G071F1_085.ab1   100 
  166  C BE404374Sn27P146B02P129G071R1_085.ab1   534 
  230    BE404374Sn27P146B02P129G071F1_085.ab1   192 
  238  C BE404374Sn27P146B02P129G071R1_085.ab1   462 
  250    BE404374Sn27P146B02P129G071F1_085.ab1   212 
  298  C BE404374Sn27P146B02P129G071R1_085.ab1   402 
  454    BE404374Sn27P146B02P129G071F1_085.ab1   416 
  474  C BE404374Sn27P146B02P129G071R1_085.ab1   226 
  562    BE404374Sn27P146B02P129G071F1_085.ab1   524 
  570  C BE404374Sn27P146B02P129G071R1_085.ab1   130 
  602    BE404374Sn27P146B02P129G071F1_085.ab1   564 
  627  C BE404374Sn27P146B02P129G071R1_085.ab1    73 
  639    BE404374Sn27P146B02P129G071F1_085.ab1   601 
  647  C BE404374Sn27P146B02P129G071R1_085.ab1    53 
  655    BE404374Sn27P146B02P129G071F1_085.ab1   617 
  691  C BE404374Sn27P146B02P129G071R1_085.ab1     9 
  695    BE404374Sn27P146B02P129G071F1_085.ab1   657 
Contig length: old 746, new 746

Contig length: old 746, new 746
New start: 0