No. words: 1116; after pruning: 1090


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    2   -2.1 -2.1 (1,1:761)  296  3.98 0.00 0.00  BE404374Sn30P129E01P146A031F1_040.ab1      256   607 (0)  C BE404374Sn30P129E01P146A031R1_040.ab1   (2)   507   156 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-2.1       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  136 nodes

 70 str. conn. components

Path
    1    BE404374Sn30P129E01P146A031F1_040.ab1     1 
  577  C BE404374Sn30P129E01P146A031R1_040.ab1   186 
  581    BE404374Sn30P129E01P146A031F1_040.ab1   581 
  597  C BE404374Sn30P129E01P146A031R1_040.ab1   166 
Contig length: old 762, new 762

Contig length: old 762, new 762
New start: 0