No. words: 1069; after pruning: 939


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    9    0.0 3.9 (1,1:665)  350  3.55 0.00 0.00  BE404374Sn30P146F02P129G071F1_023.ab1       66   459 (9)  C BE404374Sn30P146F02P129G071R1_023.ab1   (0)   601   208 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 9       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  162 nodes

 83 str. conn. components

Path
    1    BE404374Sn30P146F02P129G071F1_023.ab1     1 
  236  C BE404374Sn30P146F02P129G071R1_023.ab1   431 
  245    BE404374Sn30P146F02P129G071F1_023.ab1   245 
  340  C BE404374Sn30P146F02P129G071R1_023.ab1   327 
  352    BE404374Sn30P146F02P129G071F1_023.ab1   352 
  409  C BE404374Sn30P146F02P129G071R1_023.ab1   258 
  432    BE404374Sn30P146F02P129G071F1_023.ab1   432 
  449  C BE404374Sn30P146F02P129G071R1_023.ab1   218 
Contig length: old 666, new 666

Contig length: old 666, new 666
New start: 0 
S Change at: 63; seg lengths: entry 1, contig 1
S Change at: 463; seg lengths: entry 1, contig 1
S Change at: 483; seg lengths: entry 1, contig 1