No. words: 1061; after pruning: 1021


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    1   -2.7 -2.7 (1,1:669)  322  5.13 0.00 0.00  BE404374Sn31P129E01P146A031F1_044.ab1      143   532 (0)  C BE404374Sn31P129E01P146A031R1_044.ab1   (1)   528   139 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-2.7       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  136 nodes

 70 str. conn. components

Path
    1    BE404374Sn31P129E01P146A031F1_044.ab1     1 
  349  C BE404374Sn31P129E01P146A031R1_044.ab1   322 
  357    BE404374Sn31P129E01P146A031F1_044.ab1   357 
  430  C BE404374Sn31P129E01P146A031R1_044.ab1   241 
  434    BE404374Sn31P129E01P146A031F1_044.ab1   434 
  474  C BE404374Sn31P129E01P146A031R1_044.ab1   197 
  478    BE404374Sn31P129E01P146A031F1_044.ab1   478 
  490  C BE404374Sn31P129E01P146A031R1_044.ab1   181 
Contig length: old 670, new 670

Contig length: old 670, new 670
New start: 0 
S Change at: 503; seg lengths: entry 1, contig 1
S Change at: 522; seg lengths: entry 4, contig 4
S Change at: 611; seg lengths: entry 1, contig 1