No. words: 1399; after pruning: 1359


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.4 (1,1:649)  636  0.15 0.00 0.00  BE404374Ta19P146B02P129G071F1_093.ab1        1   650 (45)  C BE404374Ta19P146B02P129G071R1_093.ab1   (54)   650     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  324 nodes

 164 str. conn. components

Path
    1  C BE404374Ta19P146B02P129G071R1_093.ab1   704 
   70    BE404374Ta19P146B02P129G071F1_093.ab1    16 
  110  C BE404374Ta19P146B02P129G071R1_093.ab1   595 
  114    BE404374Ta19P146B02P129G071F1_093.ab1    60 
  126  C BE404374Ta19P146B02P129G071R1_093.ab1   579 
  130    BE404374Ta19P146B02P129G071F1_093.ab1    76 
  170  C BE404374Ta19P146B02P129G071R1_093.ab1   535 
  290    BE404374Ta19P146B02P129G071F1_093.ab1   236 
  302  C BE404374Ta19P146B02P129G071R1_093.ab1   403 
  422    BE404374Ta19P146B02P129G071F1_093.ab1   368 
  434  C BE404374Ta19P146B02P129G071R1_093.ab1   271 
  470    BE404374Ta19P146B02P129G071F1_093.ab1   416 
  478  C BE404374Ta19P146B02P129G071R1_093.ab1   227 
  538    BE404374Ta19P146B02P129G071F1_093.ab1   484 
  558  C BE404374Ta19P146B02P129G071R1_093.ab1   147 
  562    BE404374Ta19P146B02P129G071F1_093.ab1   508 
  574  C BE404374Ta19P146B02P129G071R1_093.ab1   131 
  610    BE404374Ta19P146B02P129G071F1_093.ab1   556 
  614  C BE404374Ta19P146B02P129G071R1_093.ab1    91 
  618    BE404374Ta19P146B02P129G071F1_093.ab1   564 
  626  C BE404374Ta19P146B02P129G071R1_093.ab1    79 
  646    BE404374Ta19P146B02P129G071F1_093.ab1   592 
  650  C BE404374Ta19P146B02P129G071R1_093.ab1    55 
  676    BE404374Ta19P146B02P129G071F1_093.ab1   622 
  680  C BE404374Ta19P146B02P129G071R1_093.ab1    25 
  692    BE404374Ta19P146B02P129G071F1_093.ab1   638 
Contig length: old 749, new 749

Contig length: old 749, new 749
New start: 0