No. words: 1277; after pruning: 1195


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.7 (1,1:649)  547  3.12 0.00 0.00  BE404374Ta23P146F02P129G071F1_003.ab1       42   650 (18)  C BE404374Ta23P146F02P129G071R1_003.ab1   (0)   609     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  256 nodes

 130 str. conn. components

Path
    1    BE404374Ta23P146F02P129G071F1_003.ab1     1 
  342  C BE404374Ta23P146F02P129G071R1_003.ab1   309 
  352    BE404374Ta23P146F02P129G071F1_003.ab1   352 
  413  C BE404374Ta23P146F02P129G071R1_003.ab1   238 
  475    BE404374Ta23P146F02P129G071F1_003.ab1   475 
  487  C BE404374Ta23P146F02P129G071R1_003.ab1   164 
  641    BE404374Ta23P146F02P129G071F1_003.ab1   641 
Contig length: old 668, new 668

Contig length: old 668, new 668
New start: 0 
S Change at: 61; seg lengths: entry 3, contig 3
S Change at: 645; seg lengths: entry 1, contig 1