No. words: 1220; after pruning: 1194


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 9.2 (1,1:619)  516  1.43 0.36 0.00  BE404374Td04P146C02P129G071F1_046.ab1        5   563 (0)  C BE404374Td04P146C02P129G071R1_046.ab1   (40)   617    57 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1  C BE404374Td04P146C02P129G071R1_046.ab1   657 
   99    BE404374Td04P146C02P129G071F1_046.ab1    61 
  107  C BE404374Td04P146C02P129G071R1_046.ab1   551 
  115    BE404374Td04P146C02P129G071F1_046.ab1    77 
  119  C BE404374Td04P146C02P129G071R1_046.ab1   539 
  235    BE404374Td04P146C02P129G071F1_046.ab1   197 
  307  C BE404374Td04P146C02P129G071R1_046.ab1   351 
  363    BE404374Td04P146C02P129G071F1_046.ab1   325 
  367  C BE404374Td04P146C02P129G071R1_046.ab1   291 
Contig length: old 657, new 657

Contig length: old 657, new 657
New start: 0