No. words: 861; after pruning: 835


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -4.2 -4.2 (1,1:497)  120  4.86 0.00 0.00  BE404374Td07P146B02P129G071F1_073.ab1      355   498 (219)  C BE404374Td07P146B02P129G071R1_073.ab1   (0)   144     1 *
  Worst pair: offset 0 
LLR breakdown: discreps: -7.3 (<20 part: -4.6 (#=6), >20:-2.7 (#=1); in HQ: -7.3, out HQ 0.0), match: 3.1  total: -4.2  120  4.86 0.00 0.00  BE404374Td07P146B02P129G071F1_073.ab1      355   498 (219)  C BE404374Td07P146B02P129G071R1_073.ab1   (0)   144     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.2       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  48 nodes

 26 str. conn. components

Path
    1    BE404374Td07P146B02P129G071F1_073.ab1     1 
Contig length: old 717, new 717

Contig length: old 717, new 717
New start: 0