No. words: 1466; after pruning: 1440


Histogram of relative pair offsets, for read pairs with multiple alignments:
55     4
99     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.0 (1,1:1012)  435  0.00 0.00 0.00  BE404580Ld05P016D01D07R1_055.ab1      247   699 (0)  C BE404580Ld05P016D01D07F1_055.ab1   (0)   767   315 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1    BE404580Ld05P016D01D07R1_055.ab1     1 
  378  C BE404580Ld05P016D01D07F1_055.ab1   636 
  386    BE404580Ld05P016D01D07R1_055.ab1   386 
  402  C BE404580Ld05P016D01D07F1_055.ab1   612 
  410    BE404580Ld05P016D01D07R1_055.ab1   410 
  414  C BE404580Ld05P016D01D07F1_055.ab1   600 
  434    BE404580Ld05P016D01D07R1_055.ab1   434 
  438  C BE404580Ld05P016D01D07F1_055.ab1   576 
Contig length: old 1013, new 1013

Contig length: old 1013, new 1013
New start: 0