No. words: 2400; after pruning: 2334


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   83    0.0 11.0 (1,1:0)  493  0.00 0.00 0.00  BE405208Ld01P078A01P078A071F1_011.ab1        1   498 (113)    BE405208Ld01P078A01P078A071F1_061.ab1        1   498 (83)  
Merge:(0)   86    0.0 9.8 (1,1:1)  490  0.20 0.00 0.40  BE405208Ld01P078A01P078A071R1_011.ab1        1   506 (86)    BE405208Ld01P078A01P078A071R1_061.ab1        1   504 (112)  
Merge:(0)    0    0.0 9.7 (2,2:441)  432  0.00 0.00 0.23  BE405208Ld01P078A01P078A071R1_011.ab1        1   442 (150)  C BE405208Ld01P078A01P078A071F1_061.ab1   (140)   441     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        0

Gap   # merges  # failures
 size
 0       1        0
83       1        0
86       1        0

Offset
  0       2 
  1       4 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  1328 nodes

 354 str. conn. components

Path
    1  C BE405208Ld01P078A01P078A071F1_011.ab1   611 
  132  C BE405208Ld01P078A01P078A071F1_061.ab1   480 
  461  C BE405208Ld01P078A01P078A071F1_011.ab1   151 
  508    BE405208Ld01P078A01P078A071R1_011.ab1   338 
  512    BE405208Ld01P078A01P078A071R1_061.ab1   340 
Contig length: old 786, new 788

Contig length: old 788, new 788
New start: 0