No. words: 2400; after pruning: 2348


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   86    0.0 11.0 (1,1:-10)  488  0.00 0.00 0.00  BE405208Ld05P078A01P078A071R1_003.ab1        1   494 (113)    BE405208Ld05P078A01P078A071R1_053.ab1       11   504 (86)  
Merge:(0)   84    0.0 10.9 (1,1:-9)  489  0.00 0.20 0.00  BE405208Ld05P078A01P078A071F1_003.ab1        1   498 (84)    BE405208Ld05P078A01P078A071F1_053.ab1        9   507 (114)  
Merge:(0)    0    0.0 9.4 (2,2:429)  425  0.00 0.46 0.00  BE405208Ld05P078A01P078A071R1_003.ab1        1   438 (169)  C BE405208Ld05P078A01P078A071F1_053.ab1   (181)   440     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        0

Gap   # merges  # failures
 size
 0       1        0
84       1        0
86       1        0

Offset
  0       6 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  1322 nodes

 352 str. conn. components

Path
    1  C BE405208Ld05P078A01P078A071F1_053.ab1   621 
  137  C BE405208Ld05P078A01P078A071F1_003.ab1   476 
  397    BE405208Ld05P078A01P078A071R1_003.ab1   214 
  429  C BE405208Ld05P078A01P078A071F1_003.ab1   184 
  509    BE405208Ld05P078A01P078A071R1_003.ab1   326 
  517    BE405208Ld05P078A01P078A071R1_053.ab1   344 
  603    BE405208Ld05P078A01P078A071R1_003.ab1   420 
  607    BE405208Ld05P078A01P078A071R1_053.ab1   434 
  655    BE405208Ld05P078A01P078A071R1_003.ab1   472 
Contig length: old 789, new 790

Contig length: old 790, new 790
New start: 0