No. words: 2384; after pruning: 2318


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   83    0.0 10.9 (1,1:1)  489  0.00 0.00 0.20  BE405208Ld09P078A01P078A071F1_046.ab1        1   499 (83)    BE405208Ld09P078A01P078A071F1_062.ab1        1   498 (111)  
Merge:(0)   85    0.0 10.7 (1,1:11)  482  0.41 0.00 0.00  BE405208Ld09P078A01P078A071R1_046.ab1       12   503 (113)    BE405208Ld09P078A01P078A071R1_062.ab1        1   492 (85)  
Merge:(0)    0    0.0 8.7 (2,2:439)  415  0.23 0.68 0.23  BE405208Ld09P078A01P078A071R1_046.ab1        1   439 (177)  C BE405208Ld09P078A01P078A071F1_062.ab1   (168)   441     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        0

Gap   # merges  # failures
 size
 0       1        0
83       1        0
85       1        0

Offset
  0       6 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  1290 nodes

 359 str. conn. components

Path
    1  C BE405208Ld09P078A01P078A071F1_062.ab1   609 
  504    BE405208Ld09P078A01P078A071R1_046.ab1   333 
  591    BE405208Ld09P078A01P078A071R1_062.ab1   409 
  599    BE405208Ld09P078A01P078A071R1_046.ab1   428 
  607    BE405208Ld09P078A01P078A071R1_062.ab1   425 
  671    BE405208Ld09P078A01P078A071R1_046.ab1   500 
Contig length: old 786, new 787

Contig length: old 787, new 787
New start: 0