No. words: 2388; after pruning: 2336


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   84    0.0 11.1 (1,1:0)  496  0.20 0.00 0.00  BE405208Ld11P078A01P078A071R1_042.ab1        1   504 (111)    BE405208Ld11P078A01P078A071R1_058.ab1        1   504 (84)  
Merge:(0)   84    0.0 10.8 (1,1:-10)  485  0.00 0.00 0.00  BE405208Ld11P078A01P078A071F1_042.ab1        1   489 (84)    BE405208Ld11P078A01P078A071F1_058.ab1       11   499 (113)  
Merge:(0)    0    0.0 8.9 (2,2:430)  424  0.23 0.45 0.00  BE405208Ld11P078A01P078A071R1_042.ab1        1   440 (175)  C BE405208Ld11P078A01P078A071F1_058.ab1   (170)   442     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        0

Gap   # merges  # failures
 size
 0       1        0
84       2        0

Offset
  0       6 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  1322 nodes

 375 str. conn. components

Path
    1  C BE405208Ld11P078A01P078A071F1_058.ab1   612 
  464    BE405208Ld11P078A01P078A071R1_042.ab1   292 
  480  C BE405208Ld11P078A01P078A071F1_058.ab1   133 
  508    BE405208Ld11P078A01P078A071R1_042.ab1   336 
  600    BE405208Ld11P078A01P078A071R1_058.ab1   428 
  672    BE405208Ld11P078A01P078A071R1_042.ab1   500 
Contig length: old 786, new 787

Contig length: old 787, new 787
New start: 0