No. words: 1250; after pruning: 1224


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    8    0.0 9.2 (1,1:499)  467  0.20 0.20 0.20  BE405221Ld10P003A04A10F1_046.ab1        1   492 (146)  C BE405221Ld10P003A04A10R1_046.ab1   (112)   500     9 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 8       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C BE405221Ld10P003A04A10R1_046.ab1   612 
  158    BE405221Ld10P003A04A10F1_046.ab1    45 
  166  C BE405221Ld10P003A04A10R1_046.ab1   447 
  170    BE405221Ld10P003A04A10F1_046.ab1    57 
  174  C BE405221Ld10P003A04A10R1_046.ab1   439 
  182    BE405221Ld10P003A04A10F1_046.ab1    69 
  186  C BE405221Ld10P003A04A10R1_046.ab1   427 
  190    BE405221Ld10P003A04A10F1_046.ab1    77 
  210  C BE405221Ld10P003A04A10R1_046.ab1   403 
  218    BE405221Ld10P003A04A10F1_046.ab1   105 
  222  C BE405221Ld10P003A04A10R1_046.ab1   391 
  258    BE405221Ld10P003A04A10F1_046.ab1   145 
  266  C BE405221Ld10P003A04A10R1_046.ab1   347 
  278    BE405221Ld10P003A04A10F1_046.ab1   165 
  286  C BE405221Ld10P003A04A10R1_046.ab1   327 
  297    BE405221Ld10P003A04A10F1_046.ab1   184 
  301  C BE405221Ld10P003A04A10R1_046.ab1   312 
  309    BE405221Ld10P003A04A10F1_046.ab1   196 
  317  C BE405221Ld10P003A04A10R1_046.ab1   296 
  337    BE405221Ld10P003A04A10F1_046.ab1   224 
  341  C BE405221Ld10P003A04A10R1_046.ab1   272 
  409    BE405221Ld10P003A04A10F1_046.ab1   296 
  425  C BE405221Ld10P003A04A10R1_046.ab1   188 
  433    BE405221Ld10P003A04A10F1_046.ab1   320 
  453  C BE405221Ld10P003A04A10R1_046.ab1   160 
  461    BE405221Ld10P003A04A10F1_046.ab1   348 
  485  C BE405221Ld10P003A04A10R1_046.ab1   128 
  489    BE405221Ld10P003A04A10F1_046.ab1   376 
  509  C BE405221Ld10P003A04A10R1_046.ab1   104 
  513    BE405221Ld10P003A04A10F1_046.ab1   400 
  545  C BE405221Ld10P003A04A10R1_046.ab1    68 
  549    BE405221Ld10P003A04A10F1_046.ab1   436 
  557  C BE405221Ld10P003A04A10R1_046.ab1    56 
  565    BE405221Ld10P003A04A10F1_046.ab1   452 
Contig length: old 750, new 751

Contig length: old 751, new 751
New start: 0