No. words: 1152; after pruning: 1126


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 11.6 (1,1:532)  523  0.00 0.00 0.00  BE405260As02P016F01F07R1_070.ab1        4   533 (45)  C BE405260As02P016F01F07F1_070.ab1   (44)   530     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  266 nodes

 135 str. conn. components

Path
    1  C BE405260As02P016F01F07F1_070.ab1   574 
  124    BE405260As02P016F01F07R1_070.ab1    83 
  128  C BE405260As02P016F01F07F1_070.ab1   447 
  136    BE405260As02P016F01F07R1_070.ab1    95 
  188  C BE405260As02P016F01F07F1_070.ab1   387 
  464    BE405260As02P016F01F07R1_070.ab1   423 
  512  C BE405260As02P016F01F07F1_070.ab1    63 
  536    BE405260As02P016F01F07R1_070.ab1   495 
Contig length: old 619, new 619

Contig length: old 619, new 619
New start: 0