No. words: 1293; after pruning: 1267


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 8.2 (1,1:487)  453  0.83 0.21 0.00  BE405348Ld03P129H01P129H071F1_087.ab1        5   488 (186)  C BE405348Ld03P129H01P129H071R1_087.ab1   (134)   485     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1  C BE405348Ld03P129H01P129H071R1_087.ab1   619 
  164    BE405348Ld03P129H01P129H071F1_087.ab1    33 
  172  C BE405348Ld03P129H01P129H071R1_087.ab1   448 
  195    BE405348Ld03P129H01P129H071F1_087.ab1    64 
  199  C BE405348Ld03P129H01P129H071R1_087.ab1   421 
  203    BE405348Ld03P129H01P129H071F1_087.ab1    72 
  219  C BE405348Ld03P129H01P129H071R1_087.ab1   401 
  223    BE405348Ld03P129H01P129H071F1_087.ab1    92 
  235  C BE405348Ld03P129H01P129H071R1_087.ab1   385 
  243    BE405348Ld03P129H01P129H071F1_087.ab1   112 
  283  C BE405348Ld03P129H01P129H071R1_087.ab1   337 
  287    BE405348Ld03P129H01P129H071F1_087.ab1   156 
  303  C BE405348Ld03P129H01P129H071R1_087.ab1   317 
  311    BE405348Ld03P129H01P129H071F1_087.ab1   180 
  319  C BE405348Ld03P129H01P129H071R1_087.ab1   301 
  327    BE405348Ld03P129H01P129H071F1_087.ab1   196 
  355  C BE405348Ld03P129H01P129H071R1_087.ab1   265 
  359    BE405348Ld03P129H01P129H071F1_087.ab1   228 
  499  C BE405348Ld03P129H01P129H071R1_087.ab1   121 
  507    BE405348Ld03P129H01P129H071F1_087.ab1   376 
  511  C BE405348Ld03P129H01P129H071R1_087.ab1   109 
  515    BE405348Ld03P129H01P129H071F1_087.ab1   384 
  543  C BE405348Ld03P129H01P129H071R1_087.ab1    77 
  547    BE405348Ld03P129H01P129H071F1_087.ab1   416 
Contig length: old 805, new 805

Contig length: old 805, new 805
New start: 0