No. words: 1287; after pruning: 1261


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.7 (1,1:481)  467  0.00 0.00 0.00  BE405348Ld07P129H01P129H071F1_094.ab1        1   482 (177)  C BE405348Ld07P129H01P129H071R1_094.ab1   (146)   482     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C BE405348Ld07P129H01P129H071R1_094.ab1   628 
  178    BE405348Ld07P129H01P129H071F1_094.ab1    32 
  186  C BE405348Ld07P129H01P129H071R1_094.ab1   443 
  214    BE405348Ld07P129H01P129H071F1_094.ab1    68 
  222  C BE405348Ld07P129H01P129H071R1_094.ab1   407 
  230    BE405348Ld07P129H01P129H071F1_094.ab1    84 
  234  C BE405348Ld07P129H01P129H071R1_094.ab1   395 
  250    BE405348Ld07P129H01P129H071F1_094.ab1   104 
  258  C BE405348Ld07P129H01P129H071R1_094.ab1   371 
  262    BE405348Ld07P129H01P129H071F1_094.ab1   116 
  278  C BE405348Ld07P129H01P129H071R1_094.ab1   351 
  286    BE405348Ld07P129H01P129H071F1_094.ab1   140 
  306  C BE405348Ld07P129H01P129H071R1_094.ab1   323 
  310    BE405348Ld07P129H01P129H071F1_094.ab1   164 
  318  C BE405348Ld07P129H01P129H071R1_094.ab1   311 
  322    BE405348Ld07P129H01P129H071F1_094.ab1   176 
  338  C BE405348Ld07P129H01P129H071R1_094.ab1   291 
  342    BE405348Ld07P129H01P129H071F1_094.ab1   196 
  466  C BE405348Ld07P129H01P129H071R1_094.ab1   163 
  482    BE405348Ld07P129H01P129H071F1_094.ab1   336 
  490  C BE405348Ld07P129H01P129H071R1_094.ab1   139 
  498    BE405348Ld07P129H01P129H071F1_094.ab1   352 
  506  C BE405348Ld07P129H01P129H071R1_094.ab1   123 
  526    BE405348Ld07P129H01P129H071F1_094.ab1   380 
  546  C BE405348Ld07P129H01P129H071R1_094.ab1    83 
  566    BE405348Ld07P129H01P129H071F1_094.ab1   420 
  578  C BE405348Ld07P129H01P129H071R1_094.ab1    51 
  582    BE405348Ld07P129H01P129H071F1_094.ab1   436 
  594  C BE405348Ld07P129H01P129H071R1_094.ab1    35 
  602    BE405348Ld07P129H01P129H071F1_094.ab1   456 
Contig length: old 805, new 805

Contig length: old 805, new 805
New start: 0