No. words: 1287; after pruning: 1261


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.8 (1,1:481)  446  1.24 0.21 0.00  BE405348Ld10P129H01P129H071F1_088.ab1        1   482 (177)  C BE405348Ld10P129H01P129H071R1_088.ab1   (145)   483     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C BE405348Ld10P129H01P129H071R1_088.ab1   628 
  253    BE405348Ld10P129H01P129H071F1_088.ab1   107 
  257  C BE405348Ld10P129H01P129H071R1_088.ab1   372 
  265    BE405348Ld10P129H01P129H071F1_088.ab1   119 
  269  C BE405348Ld10P129H01P129H071R1_088.ab1   360 
  273    BE405348Ld10P129H01P129H071F1_088.ab1   127 
  277  C BE405348Ld10P129H01P129H071R1_088.ab1   352 
  285    BE405348Ld10P129H01P129H071F1_088.ab1   139 
  305  C BE405348Ld10P129H01P129H071R1_088.ab1   324 
  313    BE405348Ld10P129H01P129H071F1_088.ab1   167 
  329  C BE405348Ld10P129H01P129H071R1_088.ab1   300 
  345    BE405348Ld10P129H01P129H071F1_088.ab1   199 
  349  C BE405348Ld10P129H01P129H071R1_088.ab1   280 
  353    BE405348Ld10P129H01P129H071F1_088.ab1   207 
  433  C BE405348Ld10P129H01P129H071R1_088.ab1   196 
  437    BE405348Ld10P129H01P129H071F1_088.ab1   291 
  465  C BE405348Ld10P129H01P129H071R1_088.ab1   164 
  481    BE405348Ld10P129H01P129H071F1_088.ab1   335 
  489  C BE405348Ld10P129H01P129H071R1_088.ab1   140 
  497    BE405348Ld10P129H01P129H071F1_088.ab1   351 
  505  C BE405348Ld10P129H01P129H071R1_088.ab1   124 
  517    BE405348Ld10P129H01P129H071F1_088.ab1   371 
Contig length: old 805, new 805

Contig length: old 805, new 805
New start: 0