No. words: 1283; after pruning: 1257


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.3 (1,1:475)  456  0.42 0.00 0.00  BE405348Ld11P129H01P129H071F1_086.ab1        1   476 (178)  C BE405348Ld11P129H01P129H071R1_086.ab1   (153)   476     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  230 nodes

 117 str. conn. components

Path
    1  C BE405348Ld11P129H01P129H071R1_086.ab1   629 
  250    BE405348Ld11P129H01P129H071F1_086.ab1    97 
  258  C BE405348Ld11P129H01P129H071R1_086.ab1   372 
  266    BE405348Ld11P129H01P129H071F1_086.ab1   113 
  282  C BE405348Ld11P129H01P129H071R1_086.ab1   348 
  294    BE405348Ld11P129H01P129H071F1_086.ab1   141 
  306  C BE405348Ld11P129H01P129H071R1_086.ab1   324 
  310    BE405348Ld11P129H01P129H071F1_086.ab1   157 
  326  C BE405348Ld11P129H01P129H071R1_086.ab1   304 
  330    BE405348Ld11P129H01P129H071F1_086.ab1   177 
  334  C BE405348Ld11P129H01P129H071R1_086.ab1   296 
  342    BE405348Ld11P129H01P129H071F1_086.ab1   189 
  350  C BE405348Ld11P129H01P129H071R1_086.ab1   280 
  354    BE405348Ld11P129H01P129H071F1_086.ab1   201 
  478  C BE405348Ld11P129H01P129H071R1_086.ab1   152 
  502    BE405348Ld11P129H01P129H071F1_086.ab1   349 
  506  C BE405348Ld11P129H01P129H071R1_086.ab1   124 
  530    BE405348Ld11P129H01P129H071F1_086.ab1   377 
  538  C BE405348Ld11P129H01P129H071R1_086.ab1    92 
  542    BE405348Ld11P129H01P129H071F1_086.ab1   389 
  546  C BE405348Ld11P129H01P129H071R1_086.ab1    84 
  550    BE405348Ld11P129H01P129H071F1_086.ab1   397 
  554  C BE405348Ld11P129H01P129H071R1_086.ab1    76 
  578    BE405348Ld11P129H01P129H071F1_086.ab1   425 
Contig length: old 807, new 807

Contig length: old 807, new 807
New start: 0