No. words: 1147; after pruning: 1121


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Rjct: (2)    1   -5.3 -5.3 (1,1:535)  427  5.24 0.19 0.00  BE405348Tu02P129H01P129H071F1_030.ab1        2   535 (34)  C BE405348Tu02P129H01P129H071R1_030.ab1   (42)   536     2 *
  Worst pair: offset 1 
LLR breakdown: discreps: -15.5 (<20 part: -12.9 (#=28), >20:-2.6 (#=1); in HQ: -15.5, out HQ 0.0), match: 11.3  trail: -0.5  lead: -0.6  total: -5.3  427  5.24 0.19 0.00  BE405348Tu02P129H01P129H071F1_030.ab1        2   535 (34)  C BE405348Tu02P129H01P129H071R1_030.ab1   (42)   536     2 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-5.3       0        1

Gap   # merges  # failures
 size
 1       0        1

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    BE405348Tu02P129H01P129H071R1_030.ab1     1 
Contig length: old 578, new 578

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    BE405348Tu02P129H01P129H071F1_030.ab1     1 
Contig length: old 569, new 569