No. words: 1472; after pruning: 1433


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.3 (1,1:328)  329  0.00 0.00 0.00  BE405496Ld08P016H01H07F1_006.ab1        1   329 (161)  C BE405496Ld08P016H01H07R1_006.scf.scf   (162)   329     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  166 nodes

 85 str. conn. components

Path
    1  C BE405496Ld08P016H01H07R1_006.scf.scf   491 
  486    BE405496Ld08P016H01H07F1_006.ab1   324 
Contig length: old 652, new 652

Contig length: old 652, new 652
New start: 0