No. words: 1249; after pruning: 1210


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.3 (1,1:368)  339  0.27 0.27 0.27  BE405509As02P016A02A08F1_025.ab1        1   369 (52)  C BE405509As02P016A02A08R1_025.scf.scf   (45)   369     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  178 nodes

 91 str. conn. components

Path
    1  C BE405509As02P016A02A08R1_025.scf.scf   414 
  409    BE405509As02P016A02A08F1_025.ab1   364 
Contig length: old 466, new 466

Contig length: old 466, new 466
New start: 0