No. words: 1268; after pruning: 1229


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.6 (1,1:385)  361  0.00 0.26 0.26  BE405509At01P016A02A08F1_023.ab1        1   386 (46)  C BE405509At01P016A02A08R1_023.scf.scf   (32)   386     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  188 nodes

 96 str. conn. components

Path
    1  C BE405509At01P016A02A08R1_023.scf.scf   418 
  396    BE405509At01P016A02A08F1_023.ab1   363 
  409  C BE405509At01P016A02A08R1_023.scf.scf    11 
  413    BE405509At01P016A02A08F1_023.ab1   380 
Contig length: old 464, new 465

Contig length: old 465, new 465
New start: 0