No. words: 1648; after pruning: 1609


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.5 (1,1:390)  369  0.00 0.26 0.00  BE405509Ld04P016A02A08F1_030.ab1        1   391 (141)  C BE405509Ld04P016A02A08R1_030.scf.scf   (166)   392     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  194 nodes

 99 str. conn. components

Path
    1  C BE405509Ld04P016A02A08R1_030.scf.scf   558 
  551    BE405509Ld04P016A02A08F1_030.ab1   384 
Contig length: old 699, new 699

Contig length: old 699, new 699
New start: 0