No. words: 1635; after pruning: 1596


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.4 (1,1:385)  364  0.00 0.26 0.00  BE405509Ld09P016A02A08F1_020.ab1        1   386 (149)  C BE405509Ld09P016A02A08R1_020.scf.scf   (163)   387     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  192 nodes

 98 str. conn. components

Path
    1  C BE405509Ld09P016A02A08R1_020.scf.scf   550 
  545    BE405509Ld09P016A02A08F1_020.ab1   381 
Contig length: old 699, new 699

Contig length: old 699, new 699
New start: 0