No. words: 1580; after pruning: 1554


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.7 (1,1:963)  604  0.00 0.00 0.00  BE405599As02P003A02P003A081F1_055.ab1      180   795 (0)  C BE405599As02P003A02P003A081R1_055.ab1   (0)   785   170 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1    BE405599As02P003A02P003A081F1_055.ab1     1 
  435  C BE405599As02P003A02P003A081R1_055.ab1   530 
  439    BE405599As02P003A02P003A081F1_055.ab1   439 
  451  C BE405599As02P003A02P003A081R1_055.ab1   514 
  459    BE405599As02P003A02P003A081F1_055.ab1   459 
  467  C BE405599As02P003A02P003A081R1_055.ab1   498 
  515    BE405599As02P003A02P003A081F1_055.ab1   515 
  523  C BE405599As02P003A02P003A081R1_055.ab1   442 
  531    BE405599As02P003A02P003A081F1_055.ab1   531 
  547  C BE405599As02P003A02P003A081R1_055.ab1   418 
Contig length: old 964, new 964

Contig length: old 964, new 964
New start: 0