No. words: 1441; after pruning: 1415


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.0 (1,1:946)  486  0.00 0.00 0.00  BE405599Ld01P003A02P003A081F1_015.ab1      284   777 (0)  C BE405599Ld01P003A02P003A081R1_015.ab1   (0)   664   171 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  248 nodes

 126 str. conn. components

Path
    1    BE405599Ld01P003A02P003A081F1_015.ab1     1 
  403  C BE405599Ld01P003A02P003A081R1_015.ab1   545 
  407    BE405599Ld01P003A02P003A081F1_015.ab1   407 
  439  C BE405599Ld01P003A02P003A081R1_015.ab1   509 
  443    BE405599Ld01P003A02P003A081F1_015.ab1   443 
  463  C BE405599Ld01P003A02P003A081R1_015.ab1   485 
  499    BE405599Ld01P003A02P003A081F1_015.ab1   499 
  507  C BE405599Ld01P003A02P003A081R1_015.ab1   441 
  511    BE405599Ld01P003A02P003A081F1_015.ab1   511 
  523  C BE405599Ld01P003A02P003A081R1_015.ab1   425 
  527    BE405599Ld01P003A02P003A081F1_015.ab1   527 
  531  C BE405599Ld01P003A02P003A081R1_015.ab1   417 
  535    BE405599Ld01P003A02P003A081F1_015.ab1   535 
  543  C BE405599Ld01P003A02P003A081R1_015.ab1   405 
Contig length: old 947, new 947

Contig length: old 947, new 947
New start: 0