No. words: 1568; after pruning: 1542


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.0 (1,1:962)  589  0.33 0.00 0.00  BE405599Ld02P003A02P003A081F1_013.ab1      174   778 (0)  C BE405599Ld02P003A02P003A081R1_013.ab1   (0)   790   186 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  300 nodes

 152 str. conn. components

Path
    1    BE405599Ld02P003A02P003A081F1_013.ab1     1 
  433  C BE405599Ld02P003A02P003A081R1_013.ab1   531 
  441    BE405599Ld02P003A02P003A081F1_013.ab1   441 
  481  C BE405599Ld02P003A02P003A081R1_013.ab1   483 
  517    BE405599Ld02P003A02P003A081F1_013.ab1   517 
  525  C BE405599Ld02P003A02P003A081R1_013.ab1   439 
  565    BE405599Ld02P003A02P003A081F1_013.ab1   565 
  569  C BE405599Ld02P003A02P003A081R1_013.ab1   395 
Contig length: old 963, new 963

Contig length: old 963, new 963
New start: 0