No. words: 1589; after pruning: 1563


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.9 (1,1:960)  618  0.00 0.00 0.00  BE405599Ld11P003A02P003A081F1_012.ab1      165   792 (0)  C BE405599Ld11P003A02P003A081R1_012.ab1   (0)   797   170 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  316 nodes

 160 str. conn. components

Path
    1    BE405599Ld11P003A02P003A081F1_012.ab1     1 
  372  C BE405599Ld11P003A02P003A081R1_012.ab1   590 
  376    BE405599Ld11P003A02P003A081F1_012.ab1   376 
  436  C BE405599Ld11P003A02P003A081R1_012.ab1   526 
  440    BE405599Ld11P003A02P003A081F1_012.ab1   440 
  492  C BE405599Ld11P003A02P003A081R1_012.ab1   470 
Contig length: old 961, new 961

Contig length: old 961, new 961
New start: 0