No. words: 1587; after pruning: 1548


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.5 (1,1:475)  462  0.00 0.00 0.21  BE406587At02P016B02B08F1_037.ab1        1   476 (57)  C BE406587At02P016B02B08R1_037.scf.scf   (52)   475     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C BE406587At02P016B02B08R1_037.scf.scf   527 
  496    BE406587At02P016B02B08F1_037.ab1   444 
  507  C BE406587At02P016B02B08R1_037.scf.scf    22 
  523    BE406587At02P016B02B08F1_037.ab1   471 
Contig length: old 584, new 585

Contig length: old 585, new 585
New start: 0