No. words: 1483; after pruning: 1429


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -3.9 -3.9 (1,1:1025)  398  0.43 1.52 1.09  BE422954Ta15P068C06P019A101F1_055.ab1      270   729 (1)  C BE422954Ta15P068C06P019A101R1_055.ab1   (0)   753   292 *
  Worst pair: offset 0 
LLR breakdown: discreps: -13.7 (<20 part: -11.3 (#=13), >20:-2.4 (#=1); in HQ: -13.7, out HQ 0.0), match: 10.1  trail: -0.3  total: -3.9  398  0.43 1.52 1.09  BE422954Ta15P068C06P019A101F1_055.ab1      270   729 (1)  C BE422954Ta15P068C06P019A101R1_055.ab1   (0)   753   292 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.9       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  188 nodes

 96 str. conn. components

Path
    1    BE422954Ta15P068C06P019A101F1_055.ab1     1 
  515  C BE422954Ta15P068C06P019A101R1_055.ab1   513 
Contig length: old 1026, new 1027

Contig length: old 1027, new 1027
New start: 0